Publications

You can also find my articles on my Google Scholar profile.

Papers

STCRpy: a software suite for T cell receptor structure parsing, interaction profiling and machine learning dataset preparation

Published in BioRxiv, 2025

Recommended citation: Quast et.al. (2025). "STCRpy: a software suite for T cell receptor structure parsing, interaction profiling and machine learning dataset preparation." BioRxiv. 1(1).
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T-cell receptor structures and predictive models reveal comparable alpha and beta chain structural diversity despite differing genetic complexity

Published in Communications Biology, 2025

Recommended citation: Quast et. al., (2009). "T-cell receptor structures and predictive models reveal comparable alpha and beta chain structural diversity despite differing genetic complexity." Communications Biology. 8(1).
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Estimating protein flexibility via uncertainty quantification of structure prediction models

Published in Machine Learning for Structural Biology @ NeurIPS 2024, 2024

Recommended citation: Quast & Sweeney et. al., (2024). "Estimating protein flexibility via uncertainty quantification of structure prediction models." Machine Learning for Structural Biology @ NeurIPS 2024. 1(1).
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The Observed T cell receptor Space database enables paired-chain repertoire mining, coherence analysis and language modeling

Published in Cell Reports, 2024

Recommended citation: Raybould & Greenshields-Watson et. al. (2024). "The Observed T cell receptor Space database enables paired-chain repertoire mining, coherence analysis and language modeling." Cell Reports. 43(9).
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Digital contact tracing service: An improved decentralized design for privacy and effectiveness

Published in ArXiv, 2020

Recommended citation: Holzapfel et. al. (2024). "Digital Contact Tracing Service: An improved decentralized design for privacy and effectiveness." ArXiv. 1(1).
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Nele Quast